{"id":86,"date":"2025-09-17T18:56:28","date_gmt":"2025-09-17T18:56:28","guid":{"rendered":"https:\/\/nplab.gr\/?page_id=86"},"modified":"2026-06-04T14:33:16","modified_gmt":"2026-06-04T14:33:16","slug":"publications-2","status":"publish","type":"page","link":"https:\/\/nplab.gr\/index.php\/publications-2\/","title":{"rendered":"Publications"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-page\" data-elementor-id=\"86\" class=\"elementor elementor-86\">\n\t\t\t\t<div class=\"elementor-element elementor-element-e1ade1d e-flex e-con-boxed e-con e-parent\" data-id=\"e1ade1d\" data-element_type=\"container\" data-e-type=\"container\">\n\t\t\t\t\t<div class=\"e-con-inner\">\n\t\t\t\t<div class=\"elementor-element elementor-element-519e8b4 elementor-widget elementor-widget-heading\" data-id=\"519e8b4\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t\t<h2 class=\"elementor-heading-title elementor-size-default\">Journals, Conferences &amp; Theses<\/h2>\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t<div class=\"elementor-element elementor-element-44a79536 e-flex e-con-boxed e-con e-parent\" data-id=\"44a79536\" data-element_type=\"container\" data-e-type=\"container\">\n\t\t\t\t\t<div class=\"e-con-inner\">\n\t\t\t\t<div class=\"elementor-element elementor-element-6ffdb3ec elementor-widget elementor-widget-text-editor\" data-id=\"6ffdb3ec\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t\t\t\t\t\t<div style=\"min-height: 300px;\"><div><h1><span style=\"font-size: 32px;\">Journal Publications<\/span><\/h1><div><ul><li><b>2026 &#8211;\u00a0 <\/b>Daily Academic\u00a0\u00a0<a href=\"https:\/\/www.daily-academic.com\/\" target=\"_blank\" rel=\"noopener\">https:\/\/www.daily-academic.com\/<\/a>\u00a0(under submission)<\/li><li><b>2025 &#8211; <\/b>Dimitris Grigoriadis, Margaritis Tsifintaris, Antonis Giannakakis, Georgios A. Pavlopoulos, Nikos Perdikopanis. Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications. Computational and Structural Biotechnology Journal. https:\/\/doi.org\/10.1016\/j.csbj.2025.11.004\u00a0 <a href=\"https:\/\/nplab.gr\/poe\" target=\"_blank\" rel=\"noopener\">https:\/\/nplab.gr\/poe<\/a><\/li><\/ul><\/div><h2>Conferences<\/h2><ul style=\"font-size: 16px;\"><li><strong>2025<\/strong> \u2013 A. Papadelas, N. Perdikopanis. <em>miRegVar: An Integrated Resournce for Variant Affectin miRNA Regulation and Function<\/em>,<br \/>Bio3 Bioinovvation Forum, Athens.<\/li><li><strong>2025<\/strong> \u2013 K Arvanitis, N Perdikopanis.\u00a0<em>Identifying Functional Small ORFs Using BERT and Multi-k-mer Representations<\/em><br \/>The 15th anniversary of Protein &amp; Peptide Conference (pepcon-2025) 1, 150<\/li><li><strong>2024<\/strong> \u2013 T Lakes, V Efstathiou, N Perdikopanis\u00a0<em>Evaluating the Impact of Variants on Translation Initiation Sites for Accurate Identification of Functional Open Reading Frames (ORFs).\u00a0<\/em>2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)<\/li><\/ul><p><!-- MSc Theses --><\/p><h2>MSc Theses<\/h2><ul style=\"padding-left: 15px; list-style: outside none disc;\"><li><strong>2025\u00a0<\/strong>&#8211;<strong>\u00a0\u00a0<\/strong>Orestis Araviadis<br \/>IRES-SNP identification and functional annotation of SNPs in Inernal Ribosome Entry Sites.<\/li><\/ul><ul style=\"padding-left: 15px; list-style: outside none disc;\"><li><strong>2025\u00a0<\/strong>&#8211;<strong>\u00a0\u00a0<\/strong>Efi Isaakoglou<br \/>LongReadIsoDB: Development of a Database of Novel Transcript Isoforms from Long-Read RNA-Seq Data.<\/li><\/ul><ul style=\"font-size: 16px;\"><li><strong>2025 <\/strong>&#8211;<strong>\u00a0 <\/strong>Nikolaos Matthaiou<br \/>Development of a Machine Learning Model for the Identification of Active IRES Elements.<\/li><li><strong>2025<\/strong>\u00a0&#8211; Papadelas Anastasios.<br \/><em>Analysis of Variants in miRNA Promoters and Effects on Gene Regulation<\/em>.<\/li><\/ul><p><!-- Undergraduate Theses --><\/p><h2>Undergraduate Theses<\/h2><ul><li><strong>2025<\/strong>\u00a0&#8211; Antigoni Stefanou<br \/>MeTiS Graph Newral Networks for secondary structure identification of TIS<\/li><li style=\"font-size: 16px;\"><strong>2025<\/strong>\u00a0&#8211; Athanasios V. Lakes.<br \/><em>Evaluating the Impact of Variants on Translation Initiation Sites (VarTIS)<\/em>.<\/li><li style=\"font-size: 16px;\"><strong>2024<\/strong>\u00a0&#8211; Efstathiou Vasiliki.<br \/><em>SeqTIS: A computational approach utilizing TIS surrounding region for TISs prediction<\/em>.<\/li><\/ul><\/div><\/div><p><!-- \/wp:html --><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>Journals, Conferences &amp; Theses Journal Publications 2026 &#8211;\u00a0 Daily Academic\u00a0\u00a0https:\/\/www.daily-academic.com\/\u00a0(under submission) 2025 &#8211; Dimitris Grigoriadis, Margaritis Tsifintaris, Antonis Giannakakis, Georgios A. Pavlopoulos, Nikos Perdikopanis. Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications. Computational and Structural Biotechnology Journal. https:\/\/doi.org\/10.1016\/j.csbj.2025.11.004\u00a0 https:\/\/nplab.gr\/poe Conferences 2025 \u2013 A. Papadelas, N. Perdikopanis. miRegVar:&hellip;&nbsp;<a href=\"https:\/\/nplab.gr\/index.php\/publications-2\/\" rel=\"bookmark\"><span class=\"screen-reader-text\">Publications<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"neve_meta_sidebar":"","neve_meta_container":"","neve_meta_enable_content_width":"","neve_meta_content_width":0,"neve_meta_title_alignment":"","neve_meta_author_avatar":"","neve_post_elements_order":"","neve_meta_disable_header":"","neve_meta_disable_footer":"","neve_meta_disable_title":"on","footnotes":""},"class_list":["post-86","page","type-page","status-publish","hentry"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v25.9 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Publications - Bioinformatics Insights<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/nplab.gr\/index.php\/publications-2\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Publications - Bioinformatics Insights\" \/>\n<meta property=\"og:description\" content=\"Journals, Conferences &amp; Theses Journal Publications 2026 &#8211;\u00a0 Daily Academic\u00a0\u00a0https:\/\/www.daily-academic.com\/\u00a0(under submission) 2025 &#8211; Dimitris Grigoriadis, Margaritis Tsifintaris, Antonis Giannakakis, Georgios A. Pavlopoulos, Nikos Perdikopanis. Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications. Computational and Structural Biotechnology Journal. https:\/\/doi.org\/10.1016\/j.csbj.2025.11.004\u00a0 https:\/\/nplab.gr\/poe Conferences 2025 \u2013 A. Papadelas, N. 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