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Journals, Conferences & Theses

Journal Publications

  • 2026 –  Daily Academic  https://www.daily-academic.com/ (under submission)
  • 2025 – Dimitris Grigoriadis, Margaritis Tsifintaris, Antonis Giannakakis, Georgios A. Pavlopoulos, Nikos Perdikopanis. Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications. Computational and Structural Biotechnology Journal. https://doi.org/10.1016/j.csbj.2025.11.004  https://nplab.gr/poe

Conferences

  • 2025 – A. Papadelas, N. Perdikopanis. miRegVar: An Integrated Resournce for Variant Affectin miRNA Regulation and Function,
    Bio3 Bioinovvation Forum, Athens.
  • 2025 – K Arvanitis, N Perdikopanis. Identifying Functional Small ORFs Using BERT and Multi-k-mer Representations
    The 15th anniversary of Protein & Peptide Conference (pepcon-2025) 1, 150
  • 2024 – T Lakes, V Efstathiou, N Perdikopanis Evaluating the Impact of Variants on Translation Initiation Sites for Accurate Identification of Functional Open Reading Frames (ORFs). 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

MSc Theses

  • 2025 –  Orestis Araviadis
    IRES-SNP identification and functional annotation of SNPs in Inernal Ribosome Entry Sites.
  • 2025 –  Efi Isaakoglou
    LongReadIsoDB: Development of a Database of Novel Transcript Isoforms from Long-Read RNA-Seq Data.
  • 2025 –  Nikolaos Matthaiou
    Development of a Machine Learning Model for the Identification of Active IRES Elements.
  • 2025 – Papadelas Anastasios.
    Analysis of Variants in miRNA Promoters and Effects on Gene Regulation.

Undergraduate Theses

  • 2025 – Antigoni Stefanou
    MeTiS Graph Newral Networks for secondary structure identification of TIS
  • 2025 – Athanasios V. Lakes.
    Evaluating the Impact of Variants on Translation Initiation Sites (VarTIS).
  • 2024 – Efstathiou Vasiliki.
    SeqTIS: A computational approach utilizing TIS surrounding region for TISs prediction.